In Vitro and In Silico Analysis of Pesticide-Induced Peroxidase Inhibition in White Cabbage Root (Brassica oleracea var. capitata f. alba)


Gerni S., BAYRAK S., Kılınç N., ÖZDEMİR H.

ChemistrySelect, cilt.10, sa.27, 2025 (SCI-Expanded) identifier identifier

  • Yayın Türü: Makale / Tam Makale
  • Cilt numarası: 10 Sayı: 27
  • Basım Tarihi: 2025
  • Doi Numarası: 10.1002/slct.202500668
  • Dergi Adı: ChemistrySelect
  • Derginin Tarandığı İndeksler: Science Citation Index Expanded (SCI-EXPANDED), Scopus, Academic Search Premier
  • Anahtar Kelimeler: Homology modelling, In vitro inhibition, Molecular docking, Pesticide, White cabbage root
  • Atatürk Üniversitesi Adresli: Evet

Özet

Pesticides pose significant environmental and health risks, making their effects on biological systems a critical concern. This study examined the inhibitory effects of three common pesticides—Pendimethalin, Bentazone, and Glyphosate—on peroxidase enzyme activity from white cabbage (Brassica oleracea var. capitata f. alba) roots under in vitro conditions. The purified enzyme exhibited optimal activity at pH 6.8, 50 °C, and 0.2 M ionic strength, with SDS-PAGE analysis confirming a molecular weight of ∼66 kDa. Pendimethalin showed the strongest inhibition, with a Ki value of 0.740 ± 0.069 µM. In silico analyses, including homology modeling, molecular docking, and MM/GBSA calculations, were performed to investigate pesticide–enzyme interactions. A homology model was built using the 1SCH structure (56.08% sequence identity). Docking scores for Glyphosate, Bentazone, and Pendimethalin were −3.443, −4.834, and −5.323 kcal/mol, respectively, while MM/GBSA binding energies were −42.14, −26.43, and −8.21 kcal/mol, correlating with experimental data. These findings reveal the molecular basis of pesticide-induced peroxidase inhibition, emphasizing the need for strategies to mitigate their toxic effects on agricultural and environmental systems.